001、计算纯合率
(base) [root@PC1 test]# ls outcome.bed outcome.fam outcome.map outcome.ped outcome.bim outcome.log outcome.nosex (base) [root@PC1 test]# (base) [root@PC1 test]# hiblup --bfile outcome --homo --out test &> /dev/null (base) [root@PC1 test]# ls ## 计算个体纯合率 outcome.bed outcome.fam outcome.map outcome.ped test.log outcome.bim outcome.log outcome.nosex test.homo (base) [root@PC1 test]# cat test.homo ## 结果 id a1a1 a2a2 1 0.4 0.4 2 0.2 0.6 3 0 1 4 0 1 5 0 1 6 0 1 (base) [root@PC1 test]# cat outcome.ped DOR 1 0 0 0 -9 T T C C A A G G A G DOR 2 0 0 0 -9 T T G C G G G G G G DOR 3 0 0 0 -9 G G C C G G G G G G DOR 4 0 0 0 -9 G G C C G G G G G G DOR 5 0 0 0 -9 G G C C G G G G G G DOR 6 0 0 0 -9 G G C C G G G G G G
002、计算杂合率
(base) [root@PC1 test]# ls outcome.bed outcome.fam outcome.map outcome.ped outcome.bim outcome.log outcome.nosex (base) [root@PC1 test]# hiblup --bfile outcome --hete --out test &> /dev/null (base) [root@PC1 test]# ls ## 计算个体杂合率 outcome.bed outcome.fam outcome.map outcome.ped test.log outcome.bim outcome.log outcome.nosex test.hete (base) [root@PC1 test]# cat test.hete ## 计算结果 id a1a2 1 0.2 2 0.2 3 0 4 0 5 0 6 0 (base) [root@PC1 test]# cat outcome.ped DOR 1 0 0 0 -9 T T C C A A G G A G DOR 2 0 0 0 -9 T T G C G G G G G G DOR 3 0 0 0 -9 G G C C G G G G G G DOR 4 0 0 0 -9 G G C C G G G G G G DOR 5 0 0 0 -9 G G C C G G G G G G DOR 6 0 0 0 -9 G G C C G G G G G G
标签：PC1,纯合率,hiblup,个体,DOR,base,test,outcome,root From： https://www.cnblogs.com/liujiaxin2018/p/17438444.html