001、系统
[root@PC1 software]# cat /etc/redhat-release CentOS Linux release 7.9.2009 (Core)
002、python版本
[root@PC1 software]# python3 --version Python 3.11.3
003、gcc版本
[root@PC1 software]# gcc --version gcc (GCC) 4.8.5 20150623 (Red Hat 4.8.5-44) Copyright (C) 2015 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
003、git下载
[root@PC1 software]# git clone https://gitlab.com/ezlab/busco.git
004、执行安装程序
[root@PC1 software]# cd busco/ [root@PC1 busco]# ls bin CHANGELOG config CONTRIBUTING.md LICENSE README.md scripts setup.py src test_data tests [root@PC1 busco]# python3 setup.py install --user
005、测试程序
[root@PC1 busco]# cd bin/
[root@PC1 bin]# ls
busco
[root@PC1 bin]# ./busco --help | head
usage: busco -i [SEQUENCE_FILE] -l [LINEAGE] -o [OUTPUT_NAME] -m [MODE] [OTHER OPTIONS]
Welcome to BUSCO 5.4.7: the Benchmarking Universal Single-Copy Ortholog assessment tool.
For more detailed usage information, please review the README file provided with this distribution and the BUSCO user guide. Visit this page https://gitlab.com/ezlab/busco#how-to-cite-busco to see how to cite BUSCO
optional arguments:
-i SEQUENCE_FILE, --in SEQUENCE_FILE
Input sequence file in FASTA format. Can be an assembled genome or transcriptome (DNA), or protein sequences from an annotated gene set. Also possible to use a path to a directory containing multiple input files.
-o OUTPUT, --out OUTPUT
Give your analysis run a recognisable short name. Output folders and files will be labelled with this name. The path to the output folder is set with --out_path.
标签：bin,--,安装,PC1,centos7,root,busco,software From： https://www.cnblogs.com/liujiaxin2018/p/17410698.html