在使用ACCEL_sifting.py文件选取脉冲星候选体文件时,缺少必要的包,安装出错,记录安装过程。
conda install presto
报错如下:
PackagesNotFoundError: The following packages are not available from current channels:
- presto
Current channels:
- https://conda.anaconda.org/conda-forge/linux-64
- https://conda.anaconda.org/conda-forge/noarch
- https://repo.anaconda.com/pkgs/main/linux-64
- https://repo.anaconda.com/pkgs/main/noarch
- https://repo.anaconda.com/pkgs/r/linux-64
- https://repo.anaconda.com/pkgs/r/noarch
To search for alternate channels that may provide the conda package you're
looking for, navigate to
https://anaconda.org
and use the search bar at the top of the page.
解决如下:
- anaconda search -t conda presto
Using Anaconda API: https://api.anaconda.org
Packages:
Name | Version | Package Types | Platforms | Builds
------------------------- | ------ | --------------- | --------------- | ----------
austintwang/r-presto | 1.0.0 | conda | linux-64 | r41h3fd9d12_0: Scalable implementation of the Wilcoxon rank sum test and auROC statistic. Interfaces to dense and sparse matrices, as well as genomics analysis frameworks Seurat and SingleCellExperiment.
bioconda/presto | 0.7.1 | conda | linux-64, noarch, osx-64 | pyhdfd78af_0, py36_1, py36_0, py_0, py_1, py35_0, py35_1: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
bioconda/prestor | 07f9c7caeb60 | conda | linux-64, osx-64 | 1, 0: A prototype package for generating quality control plots from pRESTO output.
......
- 找到自己需要的包,bioconda/presto | 0.7.1 | conda | linux-64, 这是资源位置;
然后输入以下指令找到安装的指令 (可能会提醒相关的包需要更新,yes即可!):
anaconda show bioconda/presto
Using Anaconda API: https://api.anaconda.org
Name: presto
Summary: A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data.
Access: public
Package Types: conda
Versions:
+ 0.5.4
+ 0.5.10
+ 0.5.12
+ 0.5.13
+ 0.6.0
+ 0.6.1
+ 0.6.2
+ 0.7.0
+ 0.7.1
To install this package with conda run:
conda install --channel https://conda.anaconda.org/bioconda presto
- 最后:
conda install --channel https://conda.anaconda.org/bioconda presto
Collecting package metadata (current_repodata.json): done
Solving environment: done
# All requested packages already installed.
其他包类似的步骤。
ref:
下面这个尝试几次均不可以!!!
标签:available,PackagesNotFoundError,presto,linux,conda,https,anaconda,64 From: https://www.cnblogs.com/dejiang/p/16767228.html