安装"DESeq2", "edgeR", "limma", "clusterProfiler"
bioPackages=c("DESeq2", "edgeR", "limma", "clusterProfiler")
#设置镜像
local({
r <- getOption( "repos" );
r[ "CRAN" ] <- "https://mirrors.tuna.tsinghua.edu.cn/CRAN/";
options( repos = r )
BioC <- getOption( "BioC_mirror" );
BioC[ "BioC_mirror" ] <- "https://mirrors.ustc.edu.cn/bioc/";
options( BioC_mirror = BioC )
})
if (!requireNamespace("BiocManager", quietly = TRUE))
install.packages("BiocManager")
lapply( bioPackages,
function( bioPackage ){
if( !require( bioPackage, character.only = T ) ){
CRANpackages <- available.packages()
if( bioPackage %in% rownames( CRANpackages) ){
install.packages( bioPackage )
}else{
BiocManager::install( bioPackage, suppressUpdates = FALSE, ask = FALSE)
}
}
}
)
转自：https://zhuanlan.zhihu.com/p/362312121
标签：DESeq2,edgeR,clusterProfiler,https,安装,limma From： https://www.cnblogs.com/corrschi/p/18078968