--max-missing 参数表示:最大的丢失率不超过xxxx。
(base) [root@PC1 test]# ls outcome.map outcome.ped outcome.vcf (base) [root@PC1 test]# cat outcome.map 1 snp1 0 55910 1 snp2 0 85204 1 snp3 0 122948 1 snp4 0 203750 1 snp5 0 312707 (base) [root@PC1 test]# cat outcome.ped DOR 1 0 0 0 -9 G G C C G G G G A G DOR 2 0 0 0 -9 G G G C 0 0 G G G G DOR 3 0 0 0 -9 G G C C 0 0 G G G G DOR 4 0 0 0 -9 G G 0 0 0 0 G G G G DOR 5 0 0 0 -9 0 0 0 0 0 0 G G G G DOR 6 0 0 0 -9 0 0 0 0 0 0 G G G G (base) [root@PC1 test]# vcftools --vcf outcome.vcf --max-missing 0.9 --plink --out test &> /dev/null (base) [root@PC1 test]# ls ## 最大丢失率不超过90% outcome.map outcome.ped outcome.vcf test.map test.ped (base) [root@PC1 test]# cat test.map 1 snp4 0 203750 1 snp5 0 312707
标签:vcftools,--,max,PC1,DOR,base,test,outcome From: https://www.cnblogs.com/liujiaxin2018/p/17438087.html